Dmel\Dm88

General Information
Symbol	Dmel\Dm88	Species	D.melanogaster
Name	Dm88	FlyBase ID	FBte0000267
Feature type	natural transposable element	Created / Updated	2006-12-04/2006-12-04
Sequences & Components
Complete element (bp)	4558 (Kaminker et al., 2002)
Terminal repeat (bp)
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes	Dm88\rt
Sequence Accessions
	DDBJ/EMBL/GenBank AJ439431
Sequence Ontology (SO)
Transposon type	LTR_retrotransposon (Kaminker et al., 2002) transposable_element (Kaminker et al., 2002, )
Insertions & Copy Number
Copy number and comments	32 in euchromatin of Release 3 genome annotation, of which zero are full length. (Kaminker et al., 2002)
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)
Orthologs
Curated drosophilid orthologs
Comments

Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank AJ439431
Other Crossreferences

Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	copia2 (Kapitonov and Jurka, 1997-) COPIA2_DM (O'Hare et al., 2002) Copia2_DM (Kapitonov and Jurka, 2003) COPIA2_I (Gunawardane et al., 2007) Dm88 (FlyBase, 1992-, Brennecke et al., 2007)
Name Synonym	Dm88
Secondary FlyBase IDs
	FBgn0062343 FBtp0017033
References ( 10 )
Research paper	Brennecke et al., 2007, Cell 128(6): 1089--1103 Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. [FBrf0200494] Kapitonov and Jurka, 2003, Proc. Natl. Acad. Sci. USA 100(11): 6569--6574 Molecular paleontology of transposable elements in the Drosophila melanogaster genome. [FBrf0160656] Lerat et al., 2003, Genome Res. 13(8): 1889--1896 Sequence divergence within transposable element families in the Drosophila melanogaster genome. [FBrf0162162] Kaminker et al., 2002, GenomeBiol. 3(12): RESEARCH0084.11--0084.20 The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. [FBrf0155828] O'Hare et al., 2002, Molec. Genet. Genomics 267(5): 647--655 A 5.9-kb tandem repeat at the euchromatin-heterochromatin boundary of the X chromosome of Drosophila melanogaster. [FBrf0152222] Flavell et al., 1992, Molec. gen. Genet. 231: 233--242 Extreme heterogeneity of Ty1-copia group retrotransposons in plants. [FBrf0151629]
Supplementary material	Gunawardane et al., 2007, Supporting online material. Supporting online material. [FBrf0200143]
Personal communication to FlyBase	Ashburner, 2002.8.15, te updates. te updates. [FBrf0151627]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Kapitonov and Jurka, 1997-, A reference collection of Drosophila repetitive sequences. A reference collection of Drosophila repetitive sequences. [FBrf0151607]