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Gene Dmel\CG33964

General Information
Symbol	Dmel\CG33964	Species	D. melanogaster
Name	CG33964	Annotation symbol	CG33964
Feature type	protein_coding_gene	FlyBase ID	FBgn0053964
Created / Updated	2005-09-09/2005-09-09
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	48E6-48E7	Sequence location	2R:8,070,144..8,073,011 [+]
Map ( GBrowse )	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol CG33964 (FBgn0053964). It has the cytological map location 48E6-48E7. Its sequence location is 2R:8070144..8073011. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 48E6-48E7   Limits computationally determined from genome sequence between P{PZ}SmD302833 and P{PZ}Cam03909
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology) References Gene Order (overall orientation not stated) References
Gene Model & Products
Please see the GBrowse view of Dmel\CG33964 for information on other features
Comments on Gene Model
	gene_with_dicistronic_processed_transcript ; SO:0000722 Probable mutation in sequenced strain: indel; functional allele represented by GM20958.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG33964-RA FBtr0100005  NM_001038852   2245   494
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kD) Length (aa) Theoretical pI RefSeq ID GenBank protein CG33964-PA   FBpp0099380   56.7   494   7.28     NP_001033941   AAF58558
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE003823 AAF58558   BI352827   BT003595 AAO39598   EC198111   EC202604   EC211772   EC225425   EC240126
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q86NX3
Maps to
Does NOT map to
Identified with	GM20958 (BDGP Project Members, 2000-)
Mapped Features & Mutations
Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
FlyBase-Curated Data
Transcript and Protein data	Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
Summary of Transcript Expression
Stage Tissue/Position Reference
Marker for
Subcellular Localization
CV Term
Summary of Polypeptide Expression
Stage Tissue/Position Reference
Marker for
Subcellular Localization
CV Term
External Data & Images
Linkouts
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG33964 Class Mutagen Stocks Known lesion CG33964R4.2 2 --
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG33964 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Useful duplication	Dp(2;2)Y3b
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Related Comments
	Please look at the allele reports for the complete phenotype data
Gene Ontology: Function, Process & Cellular Component ( 0 )
Molecular Function
CV term Evidence References
Biological Process
CV term Evidence References
Cellular Component
CV term Evidence References
Sequence Ontology: Class of Gene
	protein_coding_gene   nuclear_gene   gene_with_dicistronic_mRNA (FlyBase Genome Annotators, 2002-2003, FlyBase Genome Annotators, 2005)
Interactions & Pathways
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG33964 allele Gene References
External Data
Linkouts
Orthologs
Genome-wide drosophilid orthologs	Dpse\GA17328 Dana\GF12827 Dere\GG20255 Dgri\GH22793 Dmoj\GI20589 Dper\GL10807 Dsec\GM21342 Dsim\GD15405 Dvir\GJ20770 Dwil\GK22174 Dyak\GE12415
Curated drosophilid orthologs	Dsim\GD15405
Linkouts	InParanoid orthologs - Eukaryotic orthologs • MGI:3041259 Mus musculus (Informatics) AT1G16650.1 Arabidopsis thaliana (Arabidopsis) ENSXETP00000031818 Xenopus tropicalis (Ensembl) GSTENP00020841001 Tetraodon nigroviridis (Ensembl) ENSRNOP00000029686 Rattus norvegicus (Ensembl) ENSPTRP00000008950 Pan troglodytes (Ensembl) ENSMODP00000025634 Monodelphis domestica (Ensembl) ENSMMUP00000003378 Macaca mulatta (Ensembl) ENSP00000248306 Homo sapiens (Ensembl) ENSGALP00000017822 Gallus gallus (Ensembl) NEWSINFRUP00000147217 Takifugu rubripes (Ensembl) ENSCINP00000010800 Ciona intestinalis (Ensembl) ENSCAFP00000008858 Canis familiaris (Ensembl) ENSBTAP00000011034 Bos taurus (Ensembl) ENSANGP00000023256 Anopheles gambiae (Ensembl)
Functional Complementation between Species
Inter-Species Misexpression Data
Produces phenotype in
Produces NO phenotype in
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
Bloomington	2057 y1 ocR3.2; Gr22b1 Gr22d1 cn1 CG33964R4.2 bw1 sp1; LysC1 labR4.2 MstProx1 GstD51 Rh61 <E>
Tucson	14021-0231.36 y1 ocR3.2; Gr22b1 Gr22d1 cn1 CG33964R4.2 bw1 sp1; LysC1 labR4.2 MstProx1 GstD51 Rh61 <E>
Genomic Clones ( 1 )
	BACR37I09
cDNA Clones ( 1 )
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM20958
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Affy Oligo
Linkouts	DRSC - RNAi screening (Harvard): high-throughput cell culture data and design • FBgn0053964
Antibody Information
Other Information
Discoverer
Etymology
Identification
Position Effect Variegation Data
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	gene_with_dicistronic_mRNA (SO:0000722) which encodes CG13175 (FBgn0033693), CG33964 (FBgn0033695) One or more of the processed transcripts for this gene contain(s) two non-overlapping open reading frames (ORFs). The non-overlapping ORFs are represented by CG13175 (FBgn0033693), CG33964 (FBgn0033695). (FlyBase Genome Annotators, 2002-2003) Dicistronic annotation CG33154 split out into separate annotations for each open reading frame, CG13175 and CG8447, in release 4.2 of the genome annotation. (FlyBase Genome Annotators, 2005) Release 4.3 annotation CG33964 contains sequences corresponding to a merge of release 2 annotations CG8447 and CG13174. gene_with_dicistronic_mRNA (SO:0000722) which encodes CG13175 (FBgn0033693), CG33964 (FBgn0053964) One or more of the processed transcripts for this gene contain(s) two non-overlapping open reading frames (ORFs). The non-overlapping ORFs are represented by CG13175 (FBgn0033693), CG33964 (FBgn0053964) (FlyBase Genome Annotators, 2005)
Comments About Role
Comments About Molecular Function
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_001038852 RefSeq (Proteins) • NP_001033941 DDBJ / EMBL / GenBank • AAF58558.3 AAF58560.2 AE003823 AAF58558 BI352827 BT003595 AAO39598 UniProtKB/TrEMBL • Q86NX3
Other Crossreferences
Linkouts
	DRSC - RNAi screening (Harvard): high-throughput cell culture data and design • FBgn0053964 InParanoid orthologs - Eukaryotic orthologs • MGI:3041259 Mus musculus (Informatics) AT1G16650.1 Arabidopsis thaliana (Arabidopsis) ENSXETP00000031818 Xenopus tropicalis (Ensembl) GSTENP00020841001 Tetraodon nigroviridis (Ensembl) ENSRNOP00000029686 Rattus norvegicus (Ensembl) ENSPTRP00000008950 Pan troglodytes (Ensembl) ENSMODP00000025634 Monodelphis domestica (Ensembl) ENSMMUP00000003378 Macaca mulatta (Ensembl) ENSP00000248306 Homo sapiens (Ensembl) ENSGALP00000017822 Gallus gallus (Ensembl) NEWSINFRUP00000147217 Takifugu rubripes (Ensembl) ENSCINP00000010800 Ciona intestinalis (Ensembl) ENSCAFP00000008858 Canis familiaris (Ensembl) ENSBTAP00000011034 Bos taurus (Ensembl) ENSANGP00000023256 Anopheles gambiae (Ensembl)
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	CG8447 (Daborn et al., 2001, Dimova et al., 2003, Robertson, 2001.5.6, ) CG13174   CG33154 (Giot et al., 2003, ) CG33964
Name Synonym	CG33964
Secondary FlyBase IDs
	FBgn0033694 FBgn0033695 FBgn0053154 FBtr0087990 FBpp0087098 FBtr0087991 FBpp0087099
References ( 8 )
Research paper	Dimova et al., 2003, Genes Dev. 17(18): 2308--2320 Cell cycle-dependent and cell cycle-independent control of transcription by the Drosophila E2F/RB pathway. [FBrf0162136] Daborn et al., 2001, Molec. Genet. Genomics 266(4): 556--563 DDT resistance in Drosophila correlates with Cyp6g1 over-expression and confers cross-resistance to the neonicotinoid imidacloprid. [FBrf0145128]
Supplementary material	Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Robertson, 2001.5.6, FlyBase error report on Sun May 06 00:40:30 2001. FlyBase error report on Sun May 06 00:40:30 2001. [FBrf0136023]
FlyBase analysis	FlyBase Genome Annotators, 2005, Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 4.2 of the annotated D.melanogaster genome. [FBrf0182792] FlyBase Genome Annotators, 2005, Changes affecting gene model number or type in release 4.3 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 4.3 of the annotated D.melanogaster genome. [FBrf0188580] FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]