Gene Dmel\CG32631

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General Information

Symbol

Dmel\CG32631

Species

D. melanogaster

Name

CG32631

Annotation symbol

CG32631

Feature type

protein_coding_gene

FlyBase ID

FBgn0052631

Created / Updated

2003-12-01/2003-12-01

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

12A4-12A4

Sequence location

X:13,450,505..13,451,904 [+]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG32631 (FBgn0052631). It has the cytological map location 12A4. Its sequence location is X:13450505..13451904. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

12A4-12A4

Limits computationally determined from genome sequence between P{EP}CG1640^EP1626 and P{EP}NFAT^EP1353&P{EP}NFAT^EP1508

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG32631 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG32631-RA

FBtr0073799

NM_167372

1294

312

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG32631-PA

FBpp0073630

33.4

312

8.45

NP_727714

AAF48284

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VYB9

Maps to

Does NOT map to

Identified with

LP02557

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

2754

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Microarray Data

Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)

Untitled Document detailed view

AI259199

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0052631

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0052631

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0052631

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG32631	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG32631	Class	Mutagen	Stocks	Known lesion
CG32631^GD3349		in vitro construct \| RNAi in vitro construct \| regulatory fusion	1	Yes

Aneuploid Aberrations

Useful deficiency

T(1;3)143-3

Disrupted in

Df(1)Exel6246

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD3349}

Insertions

Type of insertions

Name

Expression data

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 0 )

Molecular Function

CV term

Evidence

References

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG32631 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

58689

Orthologs

Genome-wide drosophilid orthologs

Dana\GF22574

Dere\GG17789

Dgri\GH12499

Dmoj\GI14851

Dper\GL20238

Dpse\GA17031

Dsec\GM17615

Dsim\GD24808

Dvir\GJ19512

Dwil\GK20086

Dyak\GE17085

Curated drosophilid orthologs

Dpse\GA17031

Linkouts

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 1 )

VDRC

v5561

w¹¹¹⁸; P{GD3349}v5561/TM3

Genomic Clones ( 2 )

cDNA Clones ( 17 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

LP02557

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

LP10917

RNAi & Array Information

Affy Oligo

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0052631

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0052631

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Source for split of: CG1733 Annotation CG1733 split into CG32631 and CG32633 in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2002-2003)

Comments About Role

Comments About Molecular Function

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_167372

RefSeq (Proteins)

•

NP_727714

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Q9VYB9

Other Crossreferences

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

58689

DEDB - Drosophila exon database: splicing graphs

•

2754

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0052631

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0052631

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0052631

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0052631

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0052631

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0052631

Synonyms & Secondary IDs ( 2 )

Reported As

Symbol Synonym

CG1733

(Arbeitman et al., 2002, BDGP Project Members, 2000-, )

CG32631

Name Synonym

CG32631

Secondary FlyBase IDs

FBgn0030496

References ( 5 )

Research paper

Arbeitman et al., 2002, Science 297(5590): 2270--2275: Gene expression during the life cycle of Drosophila melanogaster. [FBrf0152339]

Personal communication to FlyBase

Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]

FlyBase analysis

FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]

Computer file

BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]