A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\CG6020

General Information
SymbolDmel\CG6020SpeciesD. melanogaster
NameCG6020Annotation symbolCG6020
Feature typeprotein_coding_geneFlyBase IDFBgn0037001
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map77C6-77C6Sequence location3L:20,485,182..20,490,188 [+]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol CG6020 (FBgn0037001). It has the cytological map location 77C6. Its sequence location is 3L:20485182..20490188. Its molecular function is described as: NADH dehydrogenase (ubiquinone) activity; NADH dehydrogenase activity; coenzyme binding. It is involved in the biological process mitochondrial electron transport, NADH to ubiquinone. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide.

hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
77C6-77C6  
Limits computationally determined from genome sequence between P{EP}trblEP3519 and P{EP}fngEP3082&P{lacW}skdL7062  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG6020 for information on other features
detailed view FBtr0078201 FBtr0078221 FBtr0078220 FBtr0078202 FBtr0078203 FBtr0113436 FBpp0077859 FBpp0112348 FBti0043921 FBti0066380 FBti0054566 FBti0099756 FBti0017216 FBti0057695 FBti0027395 FBti0046965 FBti0065591 FBti0048624 FBti0043636 FBti0029148 FBti0030003 FBti0039060
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
CG6020-RA
FBtr0078201
 NM_140977
  1615
  416
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
CG6020-PA  
FBpp0077859  
46.8  
416  
9.82  
  NP_649234
  AAF51613
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
•
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
•
NAD-dependent epimerase/dehydratase (IPR001509)
NAD(P)-binding (IPR016040)
MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins
•
  • MTDROME06020
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
AA567912
 
AA694949
 
AA696683
 
AA697568
 
AA697931
 
AA735266
 
AA735785
 
AA735947
 
AA803641
 
AE003591
AAF51613
 
AI062621
 
AI062904
 
AI063063
 
AI113619
 
AI113924
 
AI257966
 
AI292641
 
AI402207
 
AI402352
 
AI406154
 
AI514197
 
AI517061
 
AI520574
 
AI530973
 
AI531553
 
AI541840
 
AI543194
 
AW941372
 
BE975928
 
BE976089
 
BE977599
 
BE978575
 
BF486149
 
BF490648
 
BF491881
 
BF493749
 
BF503242
 
BG634957
 
BG635700
 
BI164545
 
BI166741
 
BI213335
 
BI353176
 
BI357337
 
BI358100
 
BI365221
 
BI482070
 
BI486231
 
BI567770
 
BI570907
 
BI571378
 
BI571973
 
BI572402
 
BI581375
 
BI581383
 
BI581606
 
BI581639
 
BI582118
 
BI582513
 
BI584426
 
BI584539
 
BI588246
 
BI588522
 
BI590949
 
BI591281
 
BI591425
 
BI591604
 
BI591607
 
BI593092
 
BI605552
 
BI606098
 
BI607663
 
BI608969
 
BI609200
 
BI611805
 
BI611835
 
BI612513
 
BI619024
 
BI621982
 
BI623216
 
BI623305
 
BI623665
 
BI623680
 
BI624259
 
BI630048
 
BI630694
 
BI631192
 
BI631379
 
BI634940
 
BI635276
 
BI635304
 
BI637366
 
BI637760
 
BI639195
 
BI639251
 
BP547272
 
BP549830
 
BP549831
 
BP553312
 
BP553313
 
BP555392
 
BP555393
 
BP558380
 
BP558381
 
BT004491
AAO42655
 
CK605523
 
CK657973
 
CK658028
 
CO156370
 
CO179698
 
CO263673
 
CO270762
 
CO273738
 
CO274996
 
CO278599
 
CO285188
 
CO289288
 
CO321554
 
CZ467156
 
CZ467157
 
CZ469144
 
CZ479053
 
CZ481797
 
EC059936
 
EC062703
 
EC065813
 
EC083435
 
EC087527
 
EC195890
 
EC196879
 
EC201051
 
EC207669
 
EC210069
 
EC219653
 
EC227999
 
EC231855
 
EC234084
 
EC246259
 
EC246349
 
EC267606
 
EL870940
 
EL871022
 
EL883383
 
EL883384
 
GH10437
 
 
UniProtKB/Swiss-Prot
    UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    (BDGP Project Members, 2000-)
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    •
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data     		Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
    Stage
    Tissue/Position
    Reference
    Marker for
      Subcellular Localization
      CV Term
      hide Summary of Polypeptide Expression
      Stage
      Tissue/Position
      Reference
      Marker for
        Subcellular Localization
        CV Term
        hide Microarray Data
        Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
        Untitled Document detailed view FBtr0078201 FBtr0078221 FBtr0078220 FBtr0078202 FBtr0078203 FBtr0113436
        AI113924
        hide External Data & Images
        Linkouts
        FLIGHT - Cell culture data for RNAi and other high-throughput technologies
        •
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        •
        GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
        •
        BDGP expression data
        •
        Show all BDGP original images, annotations and embryonic microarray data for CG6020
        FlyExpress - Embryonic expression images (BDGP data)
        •
        Show all FlyExpress processed images for CG6020
        hide Alleles & Phenotypes
        hide Summary of Allele Phenotypes
        Phenotype manifest in
        Allele
        hide Classical Alleles ( 6 )
        For All Classical Alleles Show

        Allele of CG6020ClassMutagenStocksKnown lesion
        CG6020BG014651 Yes
        CG6020EY06323
          		0 --
          CG6020c014211 --
          CG6020c042920 --
          CG6020e012441 --
          CG6020e040441 --
          hide Alleles Carried on Transgenic Constructs ( 1 )
          For All Alleles Carried on Transgenic Constructs Show

          Allele of CG6020ClassMutagenStocksKnown lesion
          CG6020GD51502 Yes
          hide Aneuploid Aberrations
          Useful deficiency
           
          Useful duplication
           
          hide Transgenic Constructs & Insertions
          Transgenic Constructs
          Type of construct
          Name
          Expression data
          UAS construct
          P{GD5150}
          NA
          Insertions
          Type of insertions
          Name
          Expression data
          miscellaneous insertions
          PBac{PB}CG5130c06997
          NA
          PBac{PB}CG6020c01421
          NA
          PBac{PB}CG6020c04292
          NA
          PBac{RB}CG6020e01244
          NA
          PBac{RB}CG6020e04044
          NA
          P{GT1}CG5130BG01465
          NA
          insertion of mobile activating element
          P{EPgy2}CG5130EY12052
          NA
          P{EPgy2}CG6020EY06323
          NA
          P{XP}CG5130d01634
          NA
          hide Related Comments
          Please look at the allele reports for the complete phenotype data
          hide Gene Ontology: Function, Process & Cellular Component ( 5 )
          hide Molecular Function
          CV term
          Evidence
          References
          NADH dehydrogenase (ubiquinone) activity
          inferred from sequence or structural similarity with UniProtKB:P34943
          (FlyBase, 1992-)
          NADH dehydrogenase activity
          inferred from sequence or structural similarity with UniProtKB:Q16795
          (Sardiello et al., 2003.6.11)
          coenzyme binding
          inferred from electronic annotation with InterPro:IPR001509
          (FlyBase Curators et al., 2004-)
          hide Biological Process
          CV term
          Evidence
          References
          mitochondrial electron transport, NADH to ubiquinone
          inferred from sequence or structural similarity with UniProtKB:Q16795
          (Sardiello et al., 2003.6.11)
          hide Cellular Component
          CV term
          Evidence
          References
          mitochondrial respiratory chain complex I
          inferred from sequence or structural similarity with UniProtKB:P34943
          (FlyBase, 1992-)
          inferred from sequence or structural similarity with UniProtKB:Q16795
          (Sardiello et al., 2003.6.11)
          hide Sequence Ontology: Class of Gene
          protein_coding_gene
           
          nuclear_gene
           
          hide Interactions & Pathways
          hide Summary of Genetic Interactions
          Interacts with
          Please look at the allele data for full details of the genetic interactions
          CG6020 allele
          Gene
          References
          hide External Data
          Linkouts
          BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions
          •
          hide Orthologs
          Genome-wide drosophilid orthologs
          Curated drosophilid orthologs
           
          Linkouts
          InParanoid orthologs - Eukaryotic or