A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\dpp

General Information
SymbolDmel\dppSpeciesD. melanogaster
NamedecapentaplegicAnnotation symbolCG9885
Feature typeprotein_coding_geneFlyBase IDFBgn0000490
Created / Updated2003-12-01/2003-12-01
Genomic Location
Chromosome (arm)2LRecombination map2-4.0
Cytogenetic map22F1-22F3Sequence location2L:2,428,454..2,459,609 [+]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene decapentaplegic is referred to in FlyBase by the symbol dpp (CG9885, FBgn0000490). It has the cytological map location 22F1-22F3. Its sequence location is 2L:2428454..2459609. Its molecular function is described as: transforming growth factor beta receptor binding; morphogen activity; signal transducer activity; specific transcriptional repressor activity; protein binding; growth factor activity. It is involved in the biological processes described with 66 unique terms, many of which group under: anatomical structure development; organ development; organ morphogenesis; open tracheal system development; gamete generation; regulation of developmental process; regulation of biological process; dorsal/ventral axis specification; cell fate commitment; axis specification. 267 alleles are reported. The phenotypes of these alleles are annotated with 175 unique terms, many of which group under: adult segment; organ system; adult mesothoracic segment; peripheral nervous system; nervous system; primordium; embryonic/larval tracheal system; thoracic segment; antennal segment; mouthpart; late extended germ band embryo. It has 5 annotated transcripts and 5 annotated polypeptides.

External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
dpp: decapentaplegic (W.M. Gelbart)
dpp is a complex locus affecting numerous developmental events. Mutations fall into three major genetic and phenotypic groupings: called shortvein (shv), Haplo-insufficiency (Hin) and imaginal disk-specific (disk). Each group maps to a different region of the dpp gene. Hin-region mutations have two distinguishing features: they are defective in normal dorsal-ventral patterning of the embryo, and they generally fail to complement mutations of the shv and disk types. shv-region mutations all show recessive defects in longitudinal wing vein formation. disk-region mutations exhibit pattern deletions in the adult epidermal derivatives of the imaginal disks. The phenotypes of most shv/disk heterozygotes suggest partial or full complementation of the shv and disk lesions. Within each of the three major groupings, several phenotypic classes of alleles have been identified. Complementation between certain combinations of dpp alleles is transvection sensitive (Gelbart, 1982, Proc. Nat. Acad. Sci. USA 79: 2636-40). The genetic properties of the several classes of dpp mutations are outlined below. For a given class, the prototypical recessive phenotypes are inferred from examinations of trans heterozygotes for two different alleles of that class. This procedure obviates possible complications due to the frequent association of dpp mutations with gross chromosomal rearrangements. Particular allelic combinations may deviate from the prototypical descriptions. Hin-region emb: Embryonic lethal mutation. Homozygous viable, but recessive lethal in combination with hin-r alleles, and, in the latter background, exhibits the same weakly ventralized phenotype as hin-r homozygotes. Completely complements all shv- and disk-region mutations. The sole emb allele is associated with a small deletion in Hin-region. Hin: Haplo-insufficient mutations. Hin/+ heterozygotes exhibit dominant embryonic lethality with the same weakly ventralized phenotype as hin-r homozygotes. Dominant lethality is rescued by duplication of dppHin+. Homozygotes are defective in gastrulation and die as embryos with completely ventralized cuticle. In general, Hin alleles do not complement any other dpp mutations. However, Hin alleles associated with small deletions or point mutations exhibit transvection effects in heterozygotes with small deletions or insertions in the shv and disk-regions. Hin mutations are considered the null alleles of the dpp gene. Hin alleles are associated with breakpoints, small deletions or point mutations in the Hin-region. Hin-Df: Haplo-insufficient mutations which are behave identically to breakoint Hin mutations, except that Hin-Df lesions are gross deletions removing the entire dpp gene and adjacent vital loci. hin-r: Recessive mutations behaving as milder versions of the Hin lesions. In homozygotes, hin-r mutations exhibit embryonic lethality with weak ventralization effects (identical to emb/hin-r or Hin/+ heterozygotes). All hin-r mutations engender temperature-sensitive mutant phenotypes when heterozygous with shv- and disk-region mutations. Phenotypes elicited in heterozygotes with small deletions, or insertions in the shv and disk regions are transvection sensitive. All hin-r mutations are cytologically normal and show no alterations in their restriction maps. Some have been associated with point mutations in the Hin-region. shv-region shv-lc: Recessive larval-lethal shortvein alleles which complement all disk-region mutations. Exhibit mutant phenotypes in heterozygotes with all shv, Hin, and hin-r mutations. Mutations generally associated with rearrangement breakpoints. shv-lnc: Recessive larval-lethal shortvein alleles which do not complement disk-region mutations. Also exhibit mutant phenotypes in heterozygotes with all shv, Hin, and hin-r mutations. Mutations generally associated with rearrangement breakpoints. shv-p: Recessive shortvein alleles surviving at least to pharate adult. Only two alleles are known; one (s11) is adult viable; exhibits strong venation defects, and variable head capsule defects, including loss of palps, and misarranged vibrissae. Allelic to all shv, Hin, and hin-r mutations. Complement all disk-region mutations. Both alleles are associated with rearrangement breakpoints. shv-w: Recessive viable and fertile shortvein alleles exhibiting only venation defects. Associated with small deletions of the shv-region. Venation phenotype allelic to all shv, Hin, and hin-r mutations. shv-w/Hin, and shv-w/hin-r mutant phenotypes are transvection sensitive. Only two alleles are known; both are associated with small deletions in the shv-region. Tg: A dominant gain-of-function allele in which the tegula on the wing appears duplicated. Tg/+ wings are held out and down. Distinct in phenotype from heldout (d-ho) homozygotes. Tg completely complements all dpp mutations. The dominant effects of Tg can be reverted by superimposing shv, Hin, or hin-r mutations on the Tg chromosome. The one Tg allele is associated with a rearrangement breakpoint in or near the shv-region. disk-region disk-blk: Recessive viable and fertile allele in which the only mutant phenotype is loss of 80-90% of ommatidia in eye; hence this allele was designated blink by Sparrow (unpublished). Exhibits mutant eye phenotypes in heterozygotes with disk-III, disk-V, Hin, and hin-r mutations. Can exhibit transvection effects. The one disk-blk allele is associated with a small deletion within the disk-region. disk-ho: Recessive viable and fertile alleles in which the only mutant phenotypes are heldout wings and loss of the Sc25 on the dorsal base of the wing. Heldout phenotype displayed in heteroyzgotes with all disk-region mutations except d-blk, and with Hin and hin-r mutations. Can exhibit transvection effects. In addition to the one mutant allele listed here, which is associated with a small deletion within the disk-region, several cytologically normal disk-ho alleles have been associated with mobilization of hobo mobile elements residing in the disk-region. disk-II: Recessive viable alleles. Homozygotes exhibit reductions in wing blade, haltere and male genitalia. Elicit mutant phenotypes in heterozygotes with all disk-region mutations except d-blk, and with Hin and hin-r mutations. Mildest class of disk-region alleles associated with rearrangement breakpoints. disk-III: Recessive viable alleles. Homozygotes exhibit multiple pattern abnormalities in epidermis of head, thorax, and terminalia. Structures absent or reduced include labial palps, arista, eye, wing blade, capitellum of haltere, tarsal claws, male terminalia, and female analia. Elicit mutant phenotypes in heterozygotes with all disk-region mutations, and with Hin and hin-r mutations. Intermediate class of disk-region alleles associated with rearrangement breakpoints. disk-V: Recessive early pupal lethal alleles. Homozygous larvae have greatly reduced imaginal disks. Elicit mutant phenotypes in heterozygotes with all disk-region mutations and with Hin and hin-r mutations. Most severe class of disk-region alleles associated with rearrangement breakpoints. t: Recessive larval-lethal alleles. Allelic to all disk, Hin, and hin-r mutations. The only two known alleles of this class behave identically to disk-V lesions, except for the earlier recessive lethal period. Tentatively classified as part of the disk-region. These two mutations are associated with breakpoints which map between the two tRNAtyr genes residing at the Hin-disk-V boundary. Hence the t designation is used to describe these alleles.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
22F1-22F3  
Limits computationally determined from genome sequence between P{lacW}Rab5k08232 and P{PZ}dpp10638  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
22F1-22F4
(determined by in situ hybridisation)  
22F1-22F2
(determined by in situ hybridisation)  
22F1-23A
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
In direction of increasing cytology: dpp? oaf? Drp1?
Gene Order (overall orientation not stated)
References
Overall orientation not stated: dpp? oaf?
Overall orientation not stated: dpp+ oaf? Overall orientation not stated: dpp+ Slh?
Overall orientation not stated: dpp? Slh? oaf?
Overall orientation not stated: dpp+ tRNA:Y1:22Fb- tRNA:Y1:22Fa+
hide Gene Model & Products
Please see the GBrowse view of Dmel\dpp for information on other features
detailed view FBtr0077771 FBtr0077772 FBtr0077773 FBtr0077774 FBtr0077775 FBpp0077454 FBpp0077451 FBpp0077453 FBpp0077452 FBpp0077455 FBti0010414 FBti0023437 FBti0039597 FBti0002737 FBti0024732 FBti0046265 FBti0066066
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0077771
  3427
  588
FBtr0077772
  4095
  588
FBtr0077773
  4238
  588
FBtr0077774
  4003
  588
FBtr0077775
  3000
  588
Additional Transcript Data & Comments
Reported size (kB)
4.5 (unknown)
Comments
Five dpp transcripts were identified by norhtern blot, and the composit cDNA sequence containing the entire ORF and the untranslated regions of the major dpp transcript are presented here. The transcripts identified range in size from 3.5 to 5.0 kb, and differ at the 5\\' end due to alternate 5\\' exon usage. All transcripts include the two 3\\'-most exons containing the entire ORF.
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
dpp-PA  
FBpp0077451  
65.9  
588  
10.41  
dpp-PB  
FBpp0077452  
65.9  
588  
10.41  
dpp-PC  
FBpp0077453  
65.9  
588  
10.41  
dpp-PD  
FBpp0077454  
65.9  
588  
10.41  
dpp-PE  
FBpp0077455  
65.9  
588  
10.41  
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
TRANSFAC - Eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles
  • R02509
  • R04953
  • R04954
  • R04955
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
 
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    enhancer
    evidence=experimental
    enhancer
    evidence=experimental
    enhancer
    evidence=experimental
    linked_to=SalI-SalI_rfrag
    enhancer
    evidence=experimental
    linked_to=EcoRI-EcoRI_rfrag
    protein binding site
    dpp-protein_bind-1
    2L:2,446,190..2,446,198
    bound_moiety=exd-XP
    bound_moiety=abd-A-XP
    evidence=experimental
    bound_moiety=Ubx-XP
    protein binding site
    dpp-protein_bind-10
    2L:2,446,096..2,446,109
    bound_moiety=Ubx-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-11
    2L:2,446,071..2,446,092
    bound_moiety=abd-A-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-12
    2L:2,450,912..2,450,917
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-13
    2L:2,446,120..2,446,130
    bound_moiety=exd-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-14
    2L:2,456,423..2,456,433
    protein binding site
    dpp-protein_bind-15
    2L:2,445,847..2,445,869
    bound_moiety=bin-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-16
    2L:2,456,675..2,456,688
    protein binding site
    dpp-protein_bind-17
    2L:2,457,291..2,457,304
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-18
    2L:2,446,323..2,446,331
    bound_moiety=Ubx-XP
    evidence=experimental
    bound_moiety=abd-A-XP
    protein binding site
    dpp-protein_bind-19
    2L:2,454,725..2,454,732
    bound_moiety=Trl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-2
    2L:2,456,607..2,456,624
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-20
    2L:2,446,065..2,446,080
    bound_moiety=Ubx-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-21
    2L:2,446,122..2,446,131
    bound_moiety=Ubx-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-22
    2L:2,450,874..2,450,879
    bound_moiety=z-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-23
    2L:2,456,665..2,456,671
    bound_moiety=grh-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-24
    2L:2,456,697..2,456,714
    protein binding site
    dpp-protein_bind-25
    2L:2,452,228..2,452,269
    bound_moiety=Ubx-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-26
    2L:2,456,702..2,456,718
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-27
    2L:2,456,462..2,456,470
    protein binding site
    dpp-protein_bind-28
    2L:2,471,447..2,471,454
    bound_moiety=en-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-29
    2L:2,456,446..2,456,465
    evidence=experimental
    bound_moiety=dl-XP
    protein binding site
    dpp-protein_bind-3
    2L:2,445,996..2,446,004
    bound_moiety=Ubx-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-30
    2L:2,456,209..2,456,223
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-31
    2L:2,446,291..2,446,296
    bound_moiety=Ubx-XP
    evidence=experimental
    bound_moiety=abd-A-XP
    protein binding site
    dpp-protein_bind-32
    2L:2,456,823..2,456,842
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-33
    2L:2,446,259..2,446,275
    bound_moiety=abd-A-XP
    evidence=experimental
    bound_moiety=Ubx-XP
    protein binding site
    dpp-protein_bind-34
    2L:2,456,485..2,456,539
    protein binding site
    dpp-protein_bind-35
    2L:2,446,281..2,446,286
    bound_moiety=Ubx-XP
    bound_moiety=abd-A-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-36
    2L:2,471,212..2,471,220
    bound_moiety=en-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-37
    2L:2,471,427..2,471,434
    bound_moiety=en-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-38
    2L:2,454,715..2,454,732
    protein binding site
    dpp-protein_bind-39
    2L:2,445,777..2,445,800
    bound_moiety=bin-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-4
    2L:2,456,179..2,456,195
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-40
    2L:2,456,997..2,457,009
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-41
    2L:2,446,084..2,446,091
    bound_moiety=Ubx-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-42
    2L:2,456,749..2,456,794
    protein binding site
    dpp-protein_bind-43
    2L:2,457,011..2,457,028
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-44
    2L:2,471,225..2,471,232
    bound_moiety=en-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-45
    2L:2,445,884..2,445,893
    bound_moiety=Ubx-XP
    bound_moiety=abd-A-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-46
    2L:2,456,485..2,456,500
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-47
    2L:2,446,151..2,446,175
    bound_moiety=bin-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-48
    2L:2,446,266..2,446,274
    bound_moiety=exd-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-49
    2L:2,456,365..2,456,372
    protein binding site
    dpp-protein_bind-5
    2L:2,456,749..2,456,764
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-50
    2L:2,446,136..2,446,140
    bound_moiety=abd-A-XP
    evidence=experimental
    bound_moiety=Ubx-XP
    protein binding site
    dpp-protein_bind-51
    2L:2,456,800..2,456,816
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-52
    2L:2,456,642..2,456,673
    protein binding site
    dpp-protein_bind-53
    2L:2,471,457..2,471,466
    bound_moiety=en-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-54
    2L:2,446,086..2,446,096
    bound_moiety=exd-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-55
    2L:2,456,352..2,456,369
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-56
    2L:2,454,658..2,454,685
    bound_moiety=Adf1-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-6
    2L:2,450,934..2,450,939
    evidence=experimental
    bound_moiety=z-XP
    protein binding site
    dpp-protein_bind-7
    2L:2,456,426..2,456,439
    bound_moiety=dl-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-8
    2L:2,446,334..2,446,342
    bound_moiety=exd-XP
    evidence=experimental
    protein binding site
    dpp-protein_bind-9
    2L:2,445,914..2,445,929
    evidence=experimental
    bound_moiety=Ubx-XP
    bound_moiety=abd-A-XP
    rescue fragment
    evidence=experimental
    linked_to=SalI-SalI_rfrag
    rescue fragment
    evidence=experimental
    linked_to=EcoRI-EcoRI_rfrag
    hide External Data
    Linkouts
    DEDB - Drosophila exon database: splicing graphs
    Crossreferences
    hide Expression Data
    FlyBase-Curated Data
    Transcript and
    Protein data
    Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
    hide Summary of Transcript Expression
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