Aberration Dmel\Df(3R)ED2

General Information
Symbol	Dmel\Df(3R)ED2	Species	D. melanogaster
Name		FlyBase ID	FBab0029731
Feature type	chromosomal_deletion	Created / Updated	2006-05-15/2006-06-14

Formalized genetic data
Sequence coordinates	3R:14224953..14922493 (91A5;91F1)
Deleted segment	91A5--91F1
Duplicated segment
Computed Breakpoints include	91F1
Breakpoints Inherited
Nature of the Aberration
Cytological Order
Progenitor	P{RS3r}koko^CB-0160-3r (Roote, 2002.2.6, Ryder, 2003.6.17, Ryder et al., 2004) P{RS5r}5-HA-1087 (Roote, 2002.2.6, Ryder, 2003.6.17, Ryder et al., 2004)
Mutagen	FLPase (Ryder, 2003.6.17, Roote, 2002.2.6, Ryder et al., 2004)
Class of aberration (relative to progenitor)	chromosomal_deletion (Ryder, 2003.6.17, Roote, 2002.2.6, Ryder et al., 2004)
Breakpoints
Causes alleles	koko^ED2 (Ryder et al., 2004)
Carries alleles
Transposon Insertions	P{3'.RS5+3.3'}koko^ED2 (Roote, 2002.2.6, Ryder et al., 2004, Ryder, 2003.6.17)
Genetic mapping information
Comments
Comments on Cytology
	Limits computationally determined from location of progenitor P insertion on genome sequence between P{PZ}cdi⁰⁷⁰¹³&P{lacW}nos^j3B6 and P{PZ}l(3)03346⁰³³⁴⁶ Confirmed by 3-step PCR confirmation as shown in http://www.drosdel.org.uk/del_confirm.php Confirmed by lack of complementation to a known lethal mutation predicted to fall between the progenitor insertions. (Ryder and Roote, 2005.11.4) Confirmed by PCR (using the 3-step process described on http://www.drosdel.org.uk/del_confirm.php). (Ryder and Roote, 2004.11.10)
Molecularly Mapped Breakpoints

Sequence Crossreferences
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
Gene Deletion & Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted	P{PZ}fray⁰⁷⁵⁵¹ (Ryder and Roote, 2004.11.10) l(3)S007302 (Roote, 2002.9.18, Ryder et al., 2004, Ryder and Roote, 2004.11.10)
Molecular Data
Genes NOT Deleted / Disrupted
Complementation Data
	gl (Ryder and Roote, 2004.11.10) l(3)02515 (Ryder and Roote, 2004.11.10) l(3)S148213 (Ryder and Roote, 2004.11.10)
Molecular Data
Genes Duplicated
Complementation Data
Molecular Data
Genes NOT Duplicated
Complementation Data
Molecular Data
Related Comments

Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Position Effect Variegation Data

Stocks ( 2 )
Szeged	- Df(3R)ED2/TM6C
Bloomington	6962 w¹¹¹⁸; Df(3R)ED2, P{3\'.RS5+3.3\'}koko^ED2/TM6C, cu¹ Sb¹
Notes on Origin
Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	Df(3R)ED2 (Liao et al., 2006, Christensen et al., 2008.4.15, Christensen et al., 2008.4.15)
Name Synonym
Secondary FlyBase IDs

References ( 10 )
Research paper	Liao et al., 2006, Genetics 174(1): 525--533 An efficient genetic screen in Drosophila to identify nuclear-encoded genes with mitochondrial function. [FBrf0192853] Ryder et al., 2004, Genetics 167(2): 797--813 The DrosDel collection: a set of P-element insertions for generating custom chromosomal aberrations in Drosophila melanogaster. [FBrf0179424]
Personal communication to FlyBase	Christensen et al., 2008.4.15, Isolation and characterization of Df(3R)BSC473. Isolation and characterization of Df(3R)BSC473. [FBrf0204551] Christensen et al., 2008.4.15, Isolation and characterization of Df(3R)BSC474. Isolation and characterization of Df(3R)BSC474. [FBrf0204552] Ryder and Roote, 2005.11.4, Update from DrosDel Database - Release 4 mappings - November 2005. Update from DrosDel Database - Release 4 mappings - November 2005. [FBrf0188738] Ryder and Roote, 2004.11.10, DrosDel deletions confirmed by PCR and genetic tests. DrosDel deletions confirmed by PCR and genetic tests. [FBrf0179888] Ryder, 2003.6.17, Drosdel deletions. Drosdel deletions. [FBrf0161091] Roote, 2002.2.6, Df kit. Df kit. [FBrf0145636] Roote, 2002.9.18, FBrf0145636 update. FBrf0145636 update. [FBrf0151663]
FlyBase analysis	FlyBase, 2007, En masse symbol-based assigment of Aberration Class with respect to wild type. En masse symbol-based assigment of Aberration Class with respect to wild type. [FBrf0191808]